Faculty Profiles - LAN Yi | The Hong Kong University of Science and Technology

Yi LAN
蘭奕

PhD in Life Science
The Hong Kong University of Science and Technology, 2020

Research Assistant Professor
Department of Ocean Science

wylan@ust.hk
Room 3641

ORCID

0000-0001-5501-1063

Scopus ID

57194390372

Research Interest Publications Projects

Research Interest

Symbiosis
Deep sea
Genomics

Publications

All Years 21 2023 1 2022 3 2021 6 2020 2 2019 3 2018 2 2017 4

2023 1

Changes in community structures and functions of the gut microbiomes of deep-sea cold seep mussels during in situ transplantation experiment

Animal Microbiome, v. 5, March 2023, article number 17
Xiao, Yao; Wang, Hao; Lan, Yi; Zhong, Cheng; Yan, Guoyong; Xu, Zhimeng; Lu, Guangyuan; Chen, Jiawei; Wei, Tong; Wong, Wai Chuen; Kwan, Yick Hang; Qian, Peiyuan
Article

2022 3

Comparative transcriptomic analysis of in situ and onboard fixed deep-sea limpets reveals sample preparation-related differences

iScience, v. 25, (4), April 2022, article number 104092
Yan, Guoyong; Lan, Yi; Sun, Jin; Xu, Ting; Wei, Tong; Qian, Peiyuan
Article

Endosymbiont population genomics sheds light on transmission mode, partner specificity, and stability of the scaly-foot snail holobiont

The ISME Journal, June 2022
Lan, Yi; Sun, Jin; Chen, Chong; Wang, Hao; Xiao, Yao; Perez, Maeva; Yang, Yi; Kwan, Yick Hang; Sun, Yanan; Zhou, Yadong; Han, Xiqiu; Miyazaki, Junichi; Watsuji, Tomo-o; Bissessur, Dass; Qiu, Jian-Wen; Takai, Ken; Qian, Peiyuan
Article

New mitogenomes in deep-water endemic Cocculinida and Neomphalida shed light on lineage-specific gene orders in major gastropod clades

Frontiers in Ecology and Evolution, v. 10, October 2022, article number 973485
Zhong, Zhaoyan; Lan, Yi; Chen, Chong; Zhou, Yadong; Linse, Katrin; Li, Runsheng; Sun, Jin
Article

2021 6

Culture Enrichment Combined with Long-Read Sequencing Facilitates Genomic Understanding of Hadal Sediment Microbes

Frontiers in Marine Science, v. 8, November 2021, article number 754332
Wang, Huan; Wang, Meng; Fan, Shen; Lu, Jie; Lan, Yi; Li, Menggong; Li, Jiangyan; Liu, Rulong; Sun, Jin; Fang, Jiasong; Qian, Peiyuan; Zhang, Yu-Zhong; Zhang, Weipeng
Article

Discovery, Bioactivity Evaluation, Biosynthetic Gene Cluster Identification, and Heterologous Expression of Novel Albofungin Derivatives

Frontiers in Microbiology, v. 12, February 2021, article number 635268
She, Weiyi; Ye, Wenkang; Cheng, Aifang; Liu, Xin; Tang, Jianwei; Lan, Yi; Chen, Feng; Qian, Peiyuan
Article

Genomic signatures supporting the symbiosis and formation of chitinous tube in the deep-sea tubeworm Paraescarpia echinospica

Molecular Biology and Evolution, v. 38, (10), October 2021, article number msab203, p. 4116-4134
Sun, Yanan; Sun, Jin; Yang, Yi; Lan, Yi; Ip, Jack Cho Ho; Wong, Wai Chuen; Kwan, Yick Hang; Zhang, Yanjie; Han, Zhuang; Qiu, Jian Wen; Qian, Peiyuan
Article

Hologenome analysis reveals dual symbiosis in the deep-sea hydrothermal vent snail Gigantopelta aegis

Nature Communications, v. 12, (1), February 2021, article number 1165
Lan, Yi; Sun, Jin; Chen, Chong; Sun, Yanan; Zhou, Yadong; Yang, Yi; Zhang, Weipeng; Li, Runsheng; Zhou, Kun; Wong, Wai Chuen; Kwan, Yick Hang; Cheng, Aifang; Bougouffa, Salim; Van Dover, Cindy Lee; Qiu, Jian-Wen; Qian, Peiyuan
Article

Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam

Molecular Biology and Evolution, v. 38, (2), February 2021, p. 502-518
Ip, Jack Chi-Ho; Xu, Ting; Sun, Jin; Li, Runsheng; Chen, Chong; Lan, Yi; Han, Zhuang; Zhang, Haibin; Wei, Jiangong; Wang, Hongbin; Tao, Jun; Cai, Zongwei; Qian, Peiyuan; Qiu, Jianwen
Article

Insights into the vision of the hadal snailfish Pseudoliparis swirei through proteomic analysis of the eye

Proteomics, v. 21, (19), October 2021, article number 2100118
Yan, Guoyong; Lian, Chun-Ang; Lan, Yi; Qian, Peiyuan; He, Lisheng
Article

2020 2

Exploring the Influence of Signal Molecules on Marine Biofilms Development

Frontier in Microbiology, v. 11, 13 November 2020, article number 571400
Wang, Ruojun; Ding, Wei; Long, Lexin; Lan, Yi; Tong, Haoya; Saha, Subhasish; Wong, Yue Him; Sun, Jin; Li, Yongxin; Zhang, Weipeng; Qian, Peiyuan
Article

The Scaly-foot snail genome and implications for the origins of biomineralised armour

Nature Communications, v. 11, (1), 08 April 2020, article number 1657
Sun, Jin; Chen, Chong; Miyamoto, Norio; Li, Runsheng; Sigwart, Julia D.; Xu, Ting; Sun, Yanan; Wong, Wai Chuen; Ip, Jack C. H.; Zhang, Weipeng; Lan, Yi; Bissessur, Dass; Watsuji, Tomo-o; Watanabe, Hiromi Kayama; Takaki, Yoshihiro; Ikeo, Kazuho; Fujii, Nobuyuki; Yoshitake, Kazutoshi; Qiu, Jian-Wen; Takai, Ken; Qian, Peiyuan
Article

2019 3

Gut Microbial Divergence between Two Populations of the Hadal Amphipod Hirondellea Gigas

Applied and Environmental Microbiology, v. 85, (1), 1 January 2019, article number e02032-18
Zhang, Weipeng; Watanabe, Hiromi Kayama; Ding, Wei; Lan, Yi; Tian, Renmao; Sun, Jin; Chen, Chong; Cai, Lin; Li, Yongxin; Oguri, Kazumasa; Toyofuku, Takashi; Kitazato, Hiroshi; Drazen, Jeffrey C.; Bartlett, Douglas; Qian, Peiyuan
Article

Host-Symbiont Interactions in Deep-Sea Chemosymbiotic Vesicomyid Clams: Insights from Transcriptome Sequencing

Frontiers in Marine Science, v. 6, November 2019, article number 680
Lan, Yi; Sun, Jin; Zhang, Weipeng; Xu, Ting; Zhang, Yu; Chen, Chong; Feng, Dong; Wang, Hongbin; Tao, Jun; Qiu, Jian-Wen; Qian, Peiyuan
Article

Signatures of Divergence, Invasiveness, and Terrestrialization Revealed by Four Apple Snail Genomes

Molecular Biology and Evolution, v. 36, (7), July 2019, p. 1507-1520
Sun, Jin; Mu, Huawei; Ip, C.H. Jack; Li, Runsheng; Xu, Ting; Accorsi, Alice; Alvarado, Alejandro Sánchez; Ross, Eric; Lan, Yi; Sun, Yanan; Castro-vazquez, Alfredo; Vega, Israel A.; Heras, Horacio; Ituarte, Santiago; Bocxlaer, Bert Van; Hayes, Kenneth A.; Cowie, Robert H.; Zhao, Zhongying; Zhang, Yu; Qian, Peiyuan; Qiu, Jian-Wen
Article

2018 2

De novo transcriptome assembly and positive selection analysis of an individual deep-sea fish

BMC Genomics, v. 19, (1), May 2018, article number 394
Lan, Yi; Sun, Jin; Xu, Ting; Chen, Chong; Tian, Renmao; Qiu, Jian-Wen; Qian, Peiyuan
Article

Genome Reduction in Psychromonas Species Within the Gut of an Amphipod From the Ocean's Deepest Point

mSystems, v. 3, (3), May-June 2018, article number e00009-18
Zhang, Weipeng; Tian, Renmao; Sun, Jin; Bougouffa, Salim; Ding Wei; Cai, Lin; Lan, Yi; Tong Haoya; Li Yongxin; Jamieson, Alan J.; Bajic, Vladimir B.; Drazen, Jeffrey C.; Bartlett, Douglas; Qian, Peiyuan
Article

2017 3

Adaptation to Deep-sea Chemosynthetic Environments as Revealed by Mussel Genomes

Nature Ecology and Evolution, v. 1, (5), April 2017, article number 0121
Sun, Jin; Zhang, Yu; Xu, Ting; Zhang, Yang; Mu, Huawei; Zhang, Yanjie; Lan, Yi; Fields, J. Christopher; Hui, Jerome Ho Lam; Zhang, Weipeng; Li, Runsheng; Nong, Wenyan; Cheung, Fiona Ka Man; Qiu, Jian-Wen; Qian, Peiyuan
Article

Comparative Transcriptomic Analysis Reveals Candidate Genes and Pathways Involved in Larval Settlement of the Barnacle Megabalanus Volcano

International Journal of Molecular Sciences, v. 18, (11), November 2017, article number 2253
Yan, Guoyong; Zhang, Gen; Huang, Jiaomei; Lan, Yi; Sun, Jin; Zeng, Cong; Wang, Yong; Qian, Peiyuan; He, Lisheng
Article

Molecular Adaptation in the World's Deepest-living Animal: Insights from Transcriptome Sequencing of the Hadal Amphipod Hirondellea Gigas

Molecular Ecology, v. 26, (14), July 2017, p. 3732-3743
Lan, Yi; Sun, Jin; Tian, Renmao; Bartlett, Douglas H.; Li, Runsheng; Wong, Yue Him; Zhang, Weipeng; Qiu, Jian-Wen; Xu, Ting; He, Li-Sheng; Tabata, Harry Gene; Qian, Peiyuan
Article

2016 1

The Deepest Mitochondrial Genome Sequenced from Mariana Trench Hirondellea Gigas (Amphipoda)

Mitochondrial DNA Part B: Resources, v. 1, (1), November 2016, p. 802-803
Lan, Yi; Sun, Jin; Bartlett, Douglas H.; Rouse, Greg W.; Tabata, Harry Gene; Qian, Peiyuan
Article

Article 1

Changes in community structures and functions of the gut microbiomes of deep-sea cold seep mussels during in situ transplantation experiment

Animal Microbiome, v. 5, March 2023, article number 17
Xiao, Yao; Wang, Hao; Lan, Yi; Zhong, Cheng; Yan, Guoyong; Xu, Zhimeng; Lu, Guangyuan; Chen, Jiawei; Wei, Tong; Wong, Wai Chuen; Kwan, Yick Hang; Qian, Peiyuan

Article 3

Comparative transcriptomic analysis of in situ and onboard fixed deep-sea limpets reveals sample preparation-related differences

iScience, v. 25, (4), April 2022, article number 104092
Yan, Guoyong; Lan, Yi; Sun, Jin; Xu, Ting; Wei, Tong; Qian, Peiyuan

Endosymbiont population genomics sheds light on transmission mode, partner specificity, and stability of the scaly-foot snail holobiont

The ISME Journal, June 2022
Lan, Yi; Sun, Jin; Chen, Chong; Wang, Hao; Xiao, Yao; Perez, Maeva; Yang, Yi; Kwan, Yick Hang; Sun, Yanan; Zhou, Yadong; Han, Xiqiu; Miyazaki, Junichi; Watsuji, Tomo-o; Bissessur, Dass; Qiu, Jian-Wen; Takai, Ken; Qian, Peiyuan

New mitogenomes in deep-water endemic Cocculinida and Neomphalida shed light on lineage-specific gene orders in major gastropod clades

Frontiers in Ecology and Evolution, v. 10, October 2022, article number 973485
Zhong, Zhaoyan; Lan, Yi; Chen, Chong; Zhou, Yadong; Linse, Katrin; Li, Runsheng; Sun, Jin

Article 6

Culture Enrichment Combined with Long-Read Sequencing Facilitates Genomic Understanding of Hadal Sediment Microbes

Frontiers in Marine Science, v. 8, November 2021, article number 754332
Wang, Huan; Wang, Meng; Fan, Shen; Lu, Jie; Lan, Yi; Li, Menggong; Li, Jiangyan; Liu, Rulong; Sun, Jin; Fang, Jiasong; Qian, Peiyuan; Zhang, Yu-Zhong; Zhang, Weipeng

Discovery, Bioactivity Evaluation, Biosynthetic Gene Cluster Identification, and Heterologous Expression of Novel Albofungin Derivatives

Frontiers in Microbiology, v. 12, February 2021, article number 635268
She, Weiyi; Ye, Wenkang; Cheng, Aifang; Liu, Xin; Tang, Jianwei; Lan, Yi; Chen, Feng; Qian, Peiyuan

Genomic signatures supporting the symbiosis and formation of chitinous tube in the deep-sea tubeworm Paraescarpia echinospica

Molecular Biology and Evolution, v. 38, (10), October 2021, article number msab203, p. 4116-4134
Sun, Yanan; Sun, Jin; Yang, Yi; Lan, Yi; Ip, Jack Cho Ho; Wong, Wai Chuen; Kwan, Yick Hang; Zhang, Yanjie; Han, Zhuang; Qiu, Jian Wen; Qian, Peiyuan

Hologenome analysis reveals dual symbiosis in the deep-sea hydrothermal vent snail Gigantopelta aegis

Nature Communications, v. 12, (1), February 2021, article number 1165
Lan, Yi; Sun, Jin; Chen, Chong; Sun, Yanan; Zhou, Yadong; Yang, Yi; Zhang, Weipeng; Li, Runsheng; Zhou, Kun; Wong, Wai Chuen; Kwan, Yick Hang; Cheng, Aifang; Bougouffa, Salim; Van Dover, Cindy Lee; Qiu, Jian-Wen; Qian, Peiyuan

Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam

Molecular Biology and Evolution, v. 38, (2), February 2021, p. 502-518
Ip, Jack Chi-Ho; Xu, Ting; Sun, Jin; Li, Runsheng; Chen, Chong; Lan, Yi; Han, Zhuang; Zhang, Haibin; Wei, Jiangong; Wang, Hongbin; Tao, Jun; Cai, Zongwei; Qian, Peiyuan; Qiu, Jianwen

Insights into the vision of the hadal snailfish Pseudoliparis swirei through proteomic analysis of the eye

Proteomics, v. 21, (19), October 2021, article number 2100118
Yan, Guoyong; Lian, Chun-Ang; Lan, Yi; Qian, Peiyuan; He, Lisheng

Article 2

Exploring the Influence of Signal Molecules on Marine Biofilms Development

Frontier in Microbiology, v. 11, 13 November 2020, article number 571400
Wang, Ruojun; Ding, Wei; Long, Lexin; Lan, Yi; Tong, Haoya; Saha, Subhasish; Wong, Yue Him; Sun, Jin; Li, Yongxin; Zhang, Weipeng; Qian, Peiyuan

The Scaly-foot snail genome and implications for the origins of biomineralised armour

Nature Communications, v. 11, (1), 08 April 2020, article number 1657
Sun, Jin; Chen, Chong; Miyamoto, Norio; Li, Runsheng; Sigwart, Julia D.; Xu, Ting; Sun, Yanan; Wong, Wai Chuen; Ip, Jack C. H.; Zhang, Weipeng; Lan, Yi; Bissessur, Dass; Watsuji, Tomo-o; Watanabe, Hiromi Kayama; Takaki, Yoshihiro; Ikeo, Kazuho; Fujii, Nobuyuki; Yoshitake, Kazutoshi; Qiu, Jian-Wen; Takai, Ken; Qian, Peiyuan

Article 3

Gut Microbial Divergence between Two Populations of the Hadal Amphipod Hirondellea Gigas

Applied and Environmental Microbiology, v. 85, (1), 1 January 2019, article number e02032-18
Zhang, Weipeng; Watanabe, Hiromi Kayama; Ding, Wei; Lan, Yi; Tian, Renmao; Sun, Jin; Chen, Chong; Cai, Lin; Li, Yongxin; Oguri, Kazumasa; Toyofuku, Takashi; Kitazato, Hiroshi; Drazen, Jeffrey C.; Bartlett, Douglas; Qian, Peiyuan

Host-Symbiont Interactions in Deep-Sea Chemosymbiotic Vesicomyid Clams: Insights from Transcriptome Sequencing

Frontiers in Marine Science, v. 6, November 2019, article number 680
Lan, Yi; Sun, Jin; Zhang, Weipeng; Xu, Ting; Zhang, Yu; Chen, Chong; Feng, Dong; Wang, Hongbin; Tao, Jun; Qiu, Jian-Wen; Qian, Peiyuan

Signatures of Divergence, Invasiveness, and Terrestrialization Revealed by Four Apple Snail Genomes

Molecular Biology and Evolution, v. 36, (7), July 2019, p. 1507-1520
Sun, Jin; Mu, Huawei; Ip, C.H. Jack; Li, Runsheng; Xu, Ting; Accorsi, Alice; Alvarado, Alejandro Sánchez; Ross, Eric; Lan, Yi; Sun, Yanan; Castro-vazquez, Alfredo; Vega, Israel A.; Heras, Horacio; Ituarte, Santiago; Bocxlaer, Bert Van; Hayes, Kenneth A.; Cowie, Robert H.; Zhao, Zhongying; Zhang, Yu; Qian, Peiyuan; Qiu, Jian-Wen

Article 2

De novo transcriptome assembly and positive selection analysis of an individual deep-sea fish

BMC Genomics, v. 19, (1), May 2018, article number 394
Lan, Yi; Sun, Jin; Xu, Ting; Chen, Chong; Tian, Renmao; Qiu, Jian-Wen; Qian, Peiyuan

Genome Reduction in Psychromonas Species Within the Gut of an Amphipod From the Ocean's Deepest Point

mSystems, v. 3, (3), May-June 2018, article number e00009-18
Zhang, Weipeng; Tian, Renmao; Sun, Jin; Bougouffa, Salim; Ding Wei; Cai, Lin; Lan, Yi; Tong Haoya; Li Yongxin; Jamieson, Alan J.; Bajic, Vladimir B.; Drazen, Jeffrey C.; Bartlett, Douglas; Qian, Peiyuan

Article 3

Adaptation to Deep-sea Chemosynthetic Environments as Revealed by Mussel Genomes

Nature Ecology and Evolution, v. 1, (5), April 2017, article number 0121
Sun, Jin; Zhang, Yu; Xu, Ting; Zhang, Yang; Mu, Huawei; Zhang, Yanjie; Lan, Yi; Fields, J. Christopher; Hui, Jerome Ho Lam; Zhang, Weipeng; Li, Runsheng; Nong, Wenyan; Cheung, Fiona Ka Man; Qiu, Jian-Wen; Qian, Peiyuan

Comparative Transcriptomic Analysis Reveals Candidate Genes and Pathways Involved in Larval Settlement of the Barnacle Megabalanus Volcano

International Journal of Molecular Sciences, v. 18, (11), November 2017, article number 2253
Yan, Guoyong; Zhang, Gen; Huang, Jiaomei; Lan, Yi; Sun, Jin; Zeng, Cong; Wang, Yong; Qian, Peiyuan; He, Lisheng

Molecular Adaptation in the World's Deepest-living Animal: Insights from Transcriptome Sequencing of the Hadal Amphipod Hirondellea Gigas

Molecular Ecology, v. 26, (14), July 2017, p. 3732-3743
Lan, Yi; Sun, Jin; Tian, Renmao; Bartlett, Douglas H.; Li, Runsheng; Wong, Yue Him; Zhang, Weipeng; Qiu, Jian-Wen; Xu, Ting; He, Li-Sheng; Tabata, Harry Gene; Qian, Peiyuan

Article 1

The Deepest Mitochondrial Genome Sequenced from Mariana Trench Hirondellea Gigas (Amphipoda)

Mitochondrial DNA Part B: Resources, v. 1, (1), November 2016, p. 802-803
Lan, Yi; Sun, Jin; Bartlett, Douglas H.; Rouse, Greg W.; Tabata, Harry Gene; Qian, Peiyuan

2017 3

Adaptation to Deep-sea Chemosynthetic Environments as Revealed by Mussel Genomes

Nature Ecology and Evolution, v. 1, (5), April 2017, article number 0121
Sun, Jin; Zhang, Yu; Xu, Ting; Zhang, Yang; Mu, Huawei; Zhang, Yanjie; Lan, Yi; Fields, J. Christopher; Hui, Jerome Ho Lam; Zhang, Weipeng; Li, Runsheng; Nong, Wenyan; Cheung, Fiona Ka Man; Qiu, Jian-Wen; Qian, Peiyuan
Article

Comparative Transcriptomic Analysis Reveals Candidate Genes and Pathways Involved in Larval Settlement of the Barnacle Megabalanus Volcano

International Journal of Molecular Sciences, v. 18, (11), November 2017, article number 2253
Yan, Guoyong; Zhang, Gen; Huang, Jiaomei; Lan, Yi; Sun, Jin; Zeng, Cong; Wang, Yong; Qian, Peiyuan; He, Lisheng
Article

Molecular Adaptation in the World's Deepest-living Animal: Insights from Transcriptome Sequencing of the Hadal Amphipod Hirondellea Gigas

Molecular Ecology, v. 26, (14), July 2017, p. 3732-3743
Lan, Yi; Sun, Jin; Tian, Renmao; Bartlett, Douglas H.; Li, Runsheng; Wong, Yue Him; Zhang, Weipeng; Qiu, Jian-Wen; Xu, Ting; He, Li-Sheng; Tabata, Harry Gene; Qian, Peiyuan
Article

2016 1

The Deepest Mitochondrial Genome Sequenced from Mariana Trench Hirondellea Gigas (Amphipoda)

Mitochondrial DNA Part B: Resources, v. 1, (1), November 2016, p. 802-803
Lan, Yi; Sun, Jin; Bartlett, Douglas H.; Rouse, Greg W.; Tabata, Harry Gene; Qian, Peiyuan
Article

Projects

From January 2021 to December 2023

All Projects 2

No Projects.
Explore the ultra-slowly expanding deep-sea hydrothermal vent systems

熱液區可形成生物膜的菌群組成及其在硫化物礦化中的作用 Participating

Ministry of Science and Technology of the People's Republic of China
Project Team (HKUST)
LAN Yi
2020 - 2021
Microbiota in hadal biosphere and their biogeochemical effect and adaptation to the extreme environment

深淵生物學資源勘探、獲取和開發的前沿技術體系研究-課題三：深淵微生物生命過程前沿科學研究 Participating

Ministry of Science and Technology of the People's Republic of China
Project Team (HKUST)
LAN Yi
2020 - 2021

Research Interest

Publications

2023 1

2022 3

2021 6

2020 2

2019 3

2018 2

2017 3

2016 1

Article 1

Article 3

Article 6

Article 2

Article 3

Article 2

Article 3

Article 1

2017 3

2016 1

Projects

From January 2021 to December 2023

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