Circulating metabolomic markers linking diabetic kidney disease and incident cardiovascular disease in type 2 diabetes: analyses from the Hong Kong Diabetes Biobank

DCES-PA: Deformation-controllable elastic shape model for 3D bone proliferation analysis using hand HR-pQCT images

PIPI2: Sensitive tag-based database search to identify peptides with multiple post-translational modifications

The Quantitative Biotinylproteomics Studies Reveal a WInd-Related Kinase 1 (Raf-Like Kinase 36) Functioning as an Early Signaling Component in Wind- Induced Thigmomorphogenesis and Gravitropism

Automatic 3D joint erosion detection for the diagnosis and monitoring of rheumatoid arthritis using hand HR-pQCT images

Capturing the hierarchically assorted modules of protein-protein interactions in the organized nucleome

ECL 3.0: a sensitive peptide identification tool for cross-linking mass spectrometry data analysis

Exhaustive Cross-Linking Search with Protein Feedback

Identification of a Common Variant for Coronary Heart Disease at PDE1A Contributes to Individualized Treatment Goals and Risk Stratification of Cardiovascular Complications in Chinese Patients With Type 2 Diabetes

Combining Tags of Various Lengths Benefits Peptide Identification in Bottom-up Proteomics

Detection of Structural Variations and Fusion Genes in Breast Cancer Samples Using Third-Generation Sequencing

Feature-based Quality Assessment of Middle Cerebral Artery Occlusion Using 18F-Fluorodeoxyglucose Positron Emission Tomography

High-density lipoprotein subclasses and cardiovascular disease and mortality in type 2 diabetes: analysis from the Hong Kong Diabetes Biobank

Cross-Linking Mass Spectrometry Data Analysis

Development of genome-wide polygenic risk scores for lipid traits and clinical applications for dyslipidaemia, subclinical atherosclerosis and diabetes cardiovascular complications among East Asians

Isotopically Dimethyl Labeling-Based Quantitative Proteomic Analysis Of Phosphoproteomes Of Soybean Cultivars

Understanding the Limit of Open Search in the Identification of Peptides with Post-translational Modifications - A Simulation-Based Study

Data imbalance in CRISPR off-target prediction

Xolik: Finding Cross-linked Peptides With Maximum Paired Scores in Linear Time

Assessment of Middle Cerebral Artery Occlusion in Rat Stroke Model Using Pearson Correlation Coefficients

Region-Based Interaction Detection in Genome-Wide Case-Control Studies

A Network Approach to Exploring the Functional Basis of Gene-gene Epistatic Interactions in Disease Susceptibility

Development of in planta chemical cross-linking-based quantitative interactomics in Arabidopsis

Establishment of Dimethyl Labelling-based Quantitative Acetylproteomics in Arabidopsis

Jointly Determining Significance Levels of Primary and Replication Studies by Controlling the False Discovery Rate in Two-stage Genome-wide Association Studies

Low-Rank Adaptive Clutter Filtering for Robust Ultrasound Vector Flow Imaging

Apical constriction is driven by a pulsatile apical myosin network in delaminating Drosophila neuroblasts

Controlling the Joint Local False Discovery Rate is more Powerful than Meta-analysis Methods in Joint Analysis of Summary Statistics from Multiple Genome-wide Association Studies

Exhaustively Identifying Cross-linked Peptides with a Linear Computational Complexity

FPGA Implementation of the Coupled Filtering Method and the Affine Warping Method

What is the Probability of Replicating a Statistically Significant Association in Genome-Wide Association Studies?

Apical constriction is driven by a pulsatile apical myosin network in delaminating Drosophila neuroblasts

Apical Constriction is Driven by a Pulsatile Apical Myosin Network in Delaminating Drosophila Neuroblasts

ECL 2.0: Exhaustively Identifying Cross-Linked Peptides with a Linear Computational Complexity

FPGA Implementation of the Coupled Filtering Method

GBOOST 2.0: A GPU-Based Tool for Detecting Gene-Gene Interactions with Covariates Adjustment in Genome-Wide Association Studies

Is it feasible to only use tags in database search for peptide identification? --- A simulation-based study

Is it feasible to only use tags in database search for PTM-invariant peptide identification? - A simulation-based study

PIPI: PTM-Invariant Peptide Identification Using Coding Method

ECL: An Exhaustive Search Tool for the Identification of Cross-linked Peptides Using Whole Database

In Planta Chemical Cross-linking and Mass Spectrometry Analysis of Protein Structure and Interaction in Arabidopsis

PIPI: PTM-Invariant Peptide Identification Using Coding Method

Power estimation and sample size determination for replication studies of genome-wide association studies

Low-Rank Modeling and Its Applications in Image Analysis

PBOOST: a GPU-based tool for parallel permutation tests in genome-wide association studies

Piecewise-constant and low-rank approximation for identification of recurrent copy number variations

A Combinatorial Perspective of the Protein Inference Problem

Bioinformatic Analysis of Data Generated from MALDI Mass Spectrometry for Biomarker Discovery

HapBoost: A Fast Approach to Boosting Haplotype Association Analyses in Genome-Wide Association Studies

Moving Object Detection by Detecting Contiguous Outliers in the Low-Rank Representation

Multisample aCGH Data Analysis via Total Variation and Spectral Regularization

On Feature Motion Decorrelation in Ultrasound Speckle Tracking

The Complete Compositional Epistasis Detection in Genome-wide Association Studies

Ultrasound Bio-Microscopic Image Segmentation for Evaluation of Zebrafish Cardiac Function

Using microPET imaging in quantitative verification of the acupuncture effect in ischemia stroke treatment

Active Contours with Group Similarity

Low-rank Modeling and its Applications in Medical Image Analysis

Guest Editors' Introduction to the Special Issue on "New Trends in Signal Processing and Biomedical Engineering"

Peptide Reranking with Protein-Peptide Correspondence and Precursor Peak Intensity Information

Protein inference: a review

Automatic Mitral Leaflet Tracking in Echocardiography by Outlier Detection in the Low-rank Representation

A Hidden Two-locus Disease Association Pattern in Genome-wide Association Studies

A Partial Set Covering Model for Protein Mixture Identification Using Mass Spectrometry Data

GBOOST: a GPU-based Tool for Detecting Gene-gene Interactions in Genome-wide Case Control Studies

Identifying Disease-associated SNP Clusters via Contiguous Outlier Detection

Motif-All: Discovering All Phosphorylation Motifs

Score regularization for peptide identification

A brief review of signal processing issues in mass spectrometry-based proteomics studies

The Choice of Null Distributions for Detecting Gene-Gene Interactions in Genome-Wide Association Studies

A Recombination Hotspot in a Schizophrenia-Associated Region of GABRB2

A Regularized Method for Peptide Quantification

BOOST: A Fast Approach to Detecting Gene-Gene Interactions in Genome-wide Case-Control Studies

Detecting Two-locus Associations Allowing for Interactions in Genome-wide Association Studies

Optimization-Based Peptide Mass Fingerprinting for Protein Mixture Identification

Predictive Rule Inference for Epistatic Interaction Detection in Genome-wide Association Studies

Stable feature selection for biomarker discovery

Proceedings 2010 3rd International Conference on Biomedical Engineering and Informatics: BMEI 2010: 16-18 October 2010, Yantai, China

A coupled filtering method to solve feature-motion decorrelation in speckle tracking

A Regularized Regression Method for Peptide Quantification

Accurate segmentation of ultrasound images using the motion cue

Identifying Main Effects and Epistatic Interactions from Large-scale SNP Data via Adaptive Group Lasso

Motif-All: Discovering All Phosphorylation Motifs

Score Regularization for Peptide Identification

Solving the Feature-Motion Decorrelation Problem in Ultrasound Speckle Tracking

SyncPro: A synchronized visualization tool for differential analysis of proteomics data sets

Comparison of public peak detection algorithms for MALDI mass spectrometry data analysis

Improving peptide identification with single-stage mass spectrum peaks

MegaSNPhunter: a Learning Approach to Detect Disease Predisposition SNPs and High Level Interactions in Genome Wide Association Study

Semi-supervised protein subcellular localization

SNPharvester: a Filtering-based Approach for Detecting Epistatic Interactions in Genome-wide Association Studies

On ACO-based fuzzy clustering for image segmentation

Optimization-based Peptide Mass Fingerprinting for Protein Mixture Identification

Bayesian mass spectra peak alignment from mass charge ratios

Improving mass spectrometry peak detection using multiple peak alignment results

Is SubcellularLocalization Informative for Modeling Protein-protein Interaction Signal?

Peak bagging for peptide mass fingerprinting

A new protocol of analyzing isotope-coded affinity tag data from high-resolution LC-MS spectrometry

A New Protocol of Analyzing Isotope Coded Affinity Tag Data from High Resolution LC-MS Spectrometry

Improving Mass Spectrometry Peak Detection Using Multiple Peak Alignment Results

Bayesian Mass Spectra Peak Alignment from Mass Charge Ratios

Detecting and aligning peaks in mass spectrometry data with applications to MALDI

MALDI-MS data analysis for disease biomarker discovery.

Multiple peak alignment in sequential data analysis: A scale-space-based approach

Towards pointwise motion tracking in echocardiographic image sequences - Comparing the reliability of different features for speckle tracking

Statistical Methods In Proteomics

Using skew Gabor filter in source signal separation and local spectral orientation analysis

Echocardiographic Image Analysis

Aligning peaks across multiple mass spectrometry data sets using a scale-space based approach

Pointwise Motion Tracking in Echocardiographic Images

The choice of tracking features in ultrasound-based strain imaging analysis

Using Skew Gabor Filter in Source Signal Separation and Local Spectral Multi-Orientation Analysis

Combinative multi-scale level set framework for echocardiographic image segmentation

Motion analysis of 3D ultrasound texture patterns

Multiple motion analysis: In spatial or in spectral domain?

Three dimensional orientation signatures with conic kernel filtering for multiple motion analysis

Motion Analysis of 3D Ultrasound Texture Patterns.

Oriented structure of the occlusion distortion: Is it reliable?

Combinative Multi-Scale Level Set Framework for Echocardiographic Image Segmentation

Approximate Orientation Steerability Based on Angular Gaussians

3D-orientation signatures with conic kernel filtering for multiple motion analysis

A New 3D Orientation Steerable Filter

Skewness of Gabor Wavelets and Source Signal Separation

Eliminating Outliers in Motion Occlusion Analysis

Detection and characterization of multiple motion points

Junction Characterization Using Polar Pyramid

Low-cost junction characterization using polar averaging filters

Rotated wedge averaging method for junction characterization

A Network Approach to Exploring the Functional Basis of Gene-gene Epistatic Interactions in Disease Susceptibility

Article

Development of in planta chemical cross-linking-based quantitative interactomics in Arabidopsis

Article

Establishment of Dimethyl Labelling-based Quantitative Acetylproteomics in Arabidopsis

Article

Jointly Determining Significance Levels of Primary and Replication Studies by Controlling the False Discovery Rate in Two-stage Genome-wide Association Studies

Article

Low-Rank Adaptive Clutter Filtering for Robust Ultrasound Vector Flow Imaging

Conference paper

Apical constriction is driven by a pulsatile apical myosin network in delaminating Drosophila neuroblasts

Article

Controlling the Joint Local False Discovery Rate is more Powerful than Meta-analysis Methods in Joint Analysis of Summary Statistics from Multiple Genome-wide Association Studies

Article

Exhaustively Identifying Cross-linked Peptides with a Linear Computational Complexity

Article

FPGA Implementation of the Coupled Filtering Method and the Affine Warping Method

Article

What is the Probability of Replicating a Statistically Significant Association in Genome-Wide Association Studies?

Article

Apical constriction is driven by a pulsatile apical myosin network in delaminating Drosophila neuroblasts

Conference paper

Apical Constriction is Driven by a Pulsatile Apical Myosin Network in Delaminating Drosophila Neuroblasts

Conference paper

ECL 2.0: Exhaustively Identifying Cross-Linked Peptides with a Linear Computational Complexity

Conference paper

FPGA Implementation of the Coupled Filtering Method

Conference paper

GBOOST 2.0: A GPU-Based Tool for Detecting Gene-Gene Interactions with Covariates Adjustment in Genome-Wide Association Studies

Conference paper

Is it feasible to only use tags in database search for peptide identification? --- A simulation-based study

Conference paper

Is it feasible to only use tags in database search for PTM-invariant peptide identification? - A simulation-based study

Conference paper

PIPI: PTM-Invariant Peptide Identification Using Coding Method

Conference paper

ECL: An Exhaustive Search Tool for the Identification of Cross-linked Peptides Using Whole Database

Article

In Planta Chemical Cross-linking and Mass Spectrometry Analysis of Protein Structure and Interaction in Arabidopsis

Article

PIPI: PTM-Invariant Peptide Identification Using Coding Method

Article

Power estimation and sample size determination for replication studies of genome-wide association studies

Conference paper

Low-Rank Modeling and Its Applications in Image Analysis

Article

PBOOST: a GPU-based tool for parallel permutation tests in genome-wide association studies

Article

Piecewise-constant and low-rank approximation for identification of recurrent copy number variations

Article

A Combinatorial Perspective of the Protein Inference Problem

Article

Bioinformatic Analysis of Data Generated from MALDI Mass Spectrometry for Biomarker Discovery

Article

HapBoost: A Fast Approach to Boosting Haplotype Association Analyses in Genome-Wide Association Studies

Article

Moving Object Detection by Detecting Contiguous Outliers in the Low-Rank Representation

Article

Multisample aCGH Data Analysis via Total Variation and Spectral Regularization

Article

On Feature Motion Decorrelation in Ultrasound Speckle Tracking

Article

The Complete Compositional Epistasis Detection in Genome-wide Association Studies

Article

Ultrasound Bio-Microscopic Image Segmentation for Evaluation of Zebrafish Cardiac Function

Article

Using microPET imaging in quantitative verification of the acupuncture effect in ischemia stroke treatment

Article

Active Contours with Group Similarity

Conference paper

Low-rank Modeling and its Applications in Medical Image Analysis

Conference paper

Guest Editors' Introduction to the Special Issue on "New Trends in Signal Processing and Biomedical Engineering"

Article

Peptide Reranking with Protein-Peptide Correspondence and Precursor Peak Intensity Information

Article

Protein inference: a review

Article

Automatic Mitral Leaflet Tracking in Echocardiography by Outlier Detection in the Low-rank Representation

Conference paper

A Hidden Two-locus Disease Association Pattern in Genome-wide Association Studies

Article

A Partial Set Covering Model for Protein Mixture Identification Using Mass Spectrometry Data

Article

GBOOST: a GPU-based Tool for Detecting Gene-gene Interactions in Genome-wide Case Control Studies

Article

Identifying Disease-associated SNP Clusters via Contiguous Outlier Detection

Article

Motif-All: Discovering All Phosphorylation Motifs

Article

Score regularization for peptide identification

Article

A brief review of signal processing issues in mass spectrometry-based proteomics studies

Conference paper

The Choice of Null Distributions for Detecting Gene-Gene Interactions in Genome-Wide Association Studies

Conference paper

A Recombination Hotspot in a Schizophrenia-Associated Region of GABRB2

Article

A Regularized Method for Peptide Quantification

Article

BOOST: A Fast Approach to Detecting Gene-Gene Interactions in Genome-wide Case-Control Studies

Article

Detecting Two-locus Associations Allowing for Interactions in Genome-wide Association Studies

Article

Optimization-Based Peptide Mass Fingerprinting for Protein Mixture Identification

Article

Predictive Rule Inference for Epistatic Interaction Detection in Genome-wide Association Studies

Article

Stable feature selection for biomarker discovery

Article

Proceedings 2010 3rd International Conference on Biomedical Engineering and Informatics: BMEI 2010: 16-18 October 2010, Yantai, China

Book

A coupled filtering method to solve feature-motion decorrelation in speckle tracking

Conference paper

A Regularized Regression Method for Peptide Quantification

Conference paper

Accurate segmentation of ultrasound images using the motion cue

Conference paper

Identifying Main Effects and Epistatic Interactions from Large-scale SNP Data via Adaptive Group Lasso

Conference paper

Motif-All: Discovering All Phosphorylation Motifs

Conference paper

Score Regularization for Peptide Identification

Conference paper

Solving the Feature-Motion Decorrelation Problem in Ultrasound Speckle Tracking

Conference paper

SyncPro: A synchronized visualization tool for differential analysis of proteomics data sets

Conference paper

Comparison of public peak detection algorithms for MALDI mass spectrometry data analysis

Article

Improving peptide identification with single-stage mass spectrum peaks

Article

MegaSNPhunter: a Learning Approach to Detect Disease Predisposition SNPs and High Level Interactions in Genome Wide Association Study

Article

Semi-supervised protein subcellular localization

Article

SNPharvester: a Filtering-based Approach for Detecting Epistatic Interactions in Genome-wide Association Studies

Article

On ACO-based fuzzy clustering for image segmentation

Conference paper

Optimization-based Peptide Mass Fingerprinting for Protein Mixture Identification

Conference paper

Bayesian mass spectra peak alignment from mass charge ratios

Article

Improving mass spectrometry peak detection using multiple peak alignment results

Article

Is SubcellularLocalization Informative for Modeling Protein-protein Interaction Signal?

Article

Peak bagging for peptide mass fingerprinting

Article

A new protocol of analyzing isotope-coded affinity tag data from high-resolution LC-MS spectrometry

Article

A New Protocol of Analyzing Isotope Coded Affinity Tag Data from High Resolution LC-MS Spectrometry

Conference paper

Improving Mass Spectrometry Peak Detection Using Multiple Peak Alignment Results

Conference paper

Bayesian Mass Spectra Peak Alignment from Mass Charge Ratios

Article

Detecting and aligning peaks in mass spectrometry data with applications to MALDI

Article

MALDI-MS data analysis for disease biomarker discovery.

Article

Multiple peak alignment in sequential data analysis: A scale-space-based approach

Article

Towards pointwise motion tracking in echocardiographic image sequences - Comparing the reliability of different features for speckle tracking

Article

Statistical Methods In Proteomics

Book chapter

Using skew Gabor filter in source signal separation and local spectral orientation analysis

Article

Echocardiographic Image Analysis

Book chapter

Aligning peaks across multiple mass spectrometry data sets using a scale-space based approach

Conference paper

Pointwise Motion Tracking in Echocardiographic Images

Conference paper

The choice of tracking features in ultrasound-based strain imaging analysis

Conference paper

Using Skew Gabor Filter in Source Signal Separation and Local Spectral Multi-Orientation Analysis

Conference paper

Combinative multi-scale level set framework for echocardiographic image segmentation

Article

Motion analysis of 3D ultrasound texture patterns

Article

Multiple motion analysis: In spatial or in spectral domain?

Article

Three dimensional orientation signatures with conic kernel filtering for multiple motion analysis

Article

Motion Analysis of 3D Ultrasound Texture Patterns.

Conference paper

Oriented structure of the occlusion distortion: Is it reliable?

Article

Combinative Multi-Scale Level Set Framework for Echocardiographic Image Segmentation

Conference paper

Approximate Orientation Steerability Based on Angular Gaussians

Article

3D-orientation signatures with conic kernel filtering for multiple motion analysis

Conference paper

A New 3D Orientation Steerable Filter

Conference paper

Skewness of Gabor Wavelets and Source Signal Separation

Conference paper

Eliminating Outliers in Motion Occlusion Analysis

Conference paper

Detection and characterization of multiple motion points

Article

Junction Characterization Using Polar Pyramid

Conference paper

Low-cost junction characterization using polar averaging filters

Conference paper

Rotated wedge averaging method for junction characterization

Conference paper