circRNADisease v2.0: an updated resource for high-quality experimentally supported circRNA-disease associations

A Multiethnic Germline-Somatic Association Database Deciphers Multilayered and Interconnected Genetic Mutations in Cancer

Enhanced clinical outcomes with radiotherapy in diagnostically challenging intracranial plasmacytomas: Analysis of 190 cases

Frequency-dependent selection of neoantigens fosters tumor immune escape and predicts immunotherapy response

Somatic PDGFRB activating variants promote smooth muscle cell phenotype modulation in intracranial fusiform aneurysm

Trans-lesion synthesis and mismatch repair pathway crosstalk defines chemoresistance and hypermutation mechanisms in glioblastoma

Adaptive DNA amplification of synthetic gene circuit opens a way to overcome cancer chemoresistance

Driving axon regeneration by orchestrating neuronal and non-neuronal innate immune responses via the IFNγ-cGAS-STING axis

Endothelial hyperactivation of mutant MAP3K3 induces cerebral cavernous malformation enhanced by PIK3CA GOF mutation

Erratum: Clinical management and survival outcomes of patients with different molecular subtypes of diffuse gliomas in China (2011-2017): a multicenter retrospective study from CGGA

Identifying predictors of glioma evolution from longitudinal sequencing

Noncoding mutations cause super-enhancer retargeting resulting in protein synthesis dysregulation during B cell lymphoma progression

Pharmacogenomic profiling reveals molecular features of chemotherapy resistance in IDH wild-type primary glioblastoma

scONE-seq: A single-cell multi-omics method enables simultaneous dissection of phenotype and genotype heterogeneity from frozen tumors

Somatic GJA4 mutation in intracranial extra-axial cavernous hemangiomas

Tumor-associated monocytes promote mesenchymal transformation through EGFR signaling in glioma

Was Wuhan the early epicenter of the COVID-19 pandemic?—A critique

Clinical management and survival outcomes of patients with different molecular subtypes of diffuse gliomas in China (2011-2017): a multicenter retrospective study from CGGA

Distinct molecular subtypes of papillary thyroid carcinoma and gene signature with diagnostic capability

Epidemiological characteristics and genetic alterations in adult diffuse glioma in East Asian populations

MET fusions and splicing variants convergently define a subgroup of glioma sensitive to MET inhibitors

Alternative Splicing of Three Genes Encoding Mechanotransduction-Complex Proteins in Auditory Hair Cells

Classifying gastric cancer using FLORA reveals clinically relevant molecular subtypes and highlights LINC01614 as a biomarker for patient prognosis

Clinical practice guidelines for the management of adult diffuse gliomas

CNAPE: A Machine Learning Method for Copy Number Alteration Prediction from Gene Expression

De Novo Germline and Somatic Variants Convergently Promote Endothelial-to-Mesenchymal Transition in Simplex Brain Arteriovenous Malformation

DeepDRK: A Deep Learning Framework for Drug Repurposing through Kernel-Based Multi-Omics Integration

EmPC-Seq: Accurate RNA-sequencing And Bioinformatics Platform To Map RNA Polymerases And Remove Background Error

Intratumor heterogeneity, microenvironment, and mechanisms of drug resistance in glioma recurrence and evolution

Machine learning of genomic features in organotropic metastases stratifies progression risk of primary tumors

Noncoding RNA processing by DIS3 regulates chromosomal architecture and somatic hypermutation in B cells

Patient-Derived Nasopharyngeal Cancer Organoids for Disease Modeling and Radiation Dose Optimization

Somatic MAP3K3 mutation defines a subclass of cerebral cavernous malformation

Germline and Somatic Mutations in Pediatric Germ Cell Tumors

A Hepatocyte Differentiation Model Reveals Two Subtypes of Liver Cancer With Different Oncofetal Properties and Therapeutic Targets

CELLO: a longitudinal data analysis toolbox untangling cancer evolution

Genomic Characterization of HIV-Associated Plasmablastic Lymphoma Identifies Pervasive Mutations in the JAK–STAT Pathway

Identifying Transcription Error-Enriched Genomic Loci Using Nuclear Run-On Circular-Sequencing Coupled with Background Error Modeling

MGMT Genomic Rearrangements Contribute to Chemotherapy Resistance in Gliomas

Mutations in the RNA Splicing Factor SF3B1 Promote Tumorigenesis through MYC Stabilization

Noncoding RNA transcription alters chromosomal topology to promote isotype-specific class switch recombination

Structural Basis for the High-Affinity Interaction between CASK and Mint1

A Mini-review on Spatiotemporal Evolution of Glioma Under Treatment

Comprehensive Characterisation of Compartment-specific Long Non-coding RNAs Associated With Pancreatic Ductal Adenocarcinoma

Deciphering Brain Complexity Using Single-cell Sequencing

Dynamic MAPK Signaling Activity Underlies a Transition From Growth Arrest to Proliferation in Drosophila Scribble Mutant Tumors

Genomic and transcriptional heterogeneity of multifocal hepatocellular carcinoma

Hierarchical Graphical Model Reveals HFR1 Bridging Circadian Rhythm and Flower Development in Arabidopsis Thaliana

Repurposing dasatinib for diffuse large B cell lymphoma

Single cell transcriptomic landscapes of pattern formation, proliferation and growth in Drosophila wing imaginal discs

The Long Noncoding RNA Paupar Modulates PAX6 Regulatory Activities to Promote Alpha Cell Development and Function

GeneCT: a generalizable cancerous status and tissue origin classifier for pan-cancer biopsies

Genetic landscape of ultra-stable chronic lymphocytic leukemia patients

Increased HOXA5 Expression Provides a Selective Advantage for Gain of Whole Chromosome 7 in IDH Wild-type Glioblastoma

Mutational Landscape of Secondary Glioblastoma Guides MET-Targeted Trial in Brain Tumor

Pharmacogenomic landscape of patient-derived tumor cells informs precision oncology therapy

Refined karyotype-based prognostic stratification of chronic lymphocytic leukemia with a low-and very-low-risk genetic profile

An NF-κB Transcription-Factor-Dependent Lineage-Specific Transcriptional Program Promotes Regulatory T Cell Identity and Function

Identification of Potentially Oncogenic Alterations from Tumor-only Samples Reveals Fanconi Anemia Pathway Mutations in Bladder Carcinomas

Repurposing Dasatinib for Ibrutinib-Resistant Diffuse Large B-Cell Lymphoma

RNA Exosome Complex-Mediated Control of Redox Status in Pluripotent Stem Cells

Spatiotemporal Genomic Architecture Informs Precision Oncology in Glioblastoma

Clonal evolution of glioblastoma under therapy

Genetic Landscape and Gene Expression Profile of Chronic Lymphocytic Leukemia Patients with Ultra-Stable Disease

Inter- and intra-patient clonal and subclonal heterogeneity of chronic lymphocytic leukaemia: Evidences from circulating and lymph nodal compartments

Kinase-dead ATM protein is highly oncogenic and can be preferentially targeted by Topo-isomerase I inhibitors

Network Propagation Reveals Novel Features Predicting Drug Response of Cancer Cell Lines

Network stratification analysis for identifying function-specific network layers

Prognostic and therapeutic role of targetable lesions in B-lineage acute lymphoblastic leukemia without recurrent fusion genes

An information theoretic method to identify combinations of genomic alterations that promote glioblastoma

RNA exosome-regulated long non-coding RNA transcription controls super-enhancer activity

Transcriptomics identify CD9 as a marker of murine IL10-competent regulatory B cells

Clinical Impact of Small TP53 Mutated Subclones in Chronic Lymphocytic Leukemia

Noncoding RNA Transcription Targets AID to Divergently Transcribed Loci in B Cells

PU.1 is essential for MLL leukemia partially via crosstalk with the MEIS/HOX pathway

Tumor evolutionary directed graphs and the history of chronic lymphocytic leukemia

复杂疾病的分子网络模型研究

APG: an active protein-gene network model to quantify regulatory signals in complex biological systems

E3-ubiquitin Ligase Nedd4 Determines the Fate of AID-associated RNA Polymerase II in B cells

Genetic Lesions Associated with Chronic Lymphocytic Leukemia Transformation to Richter Syndrome

NOA: A cytoscape plugin for network ontology analysis

Whole-exome Sequencing Reveals Recurrent Somatic Mutation Networks In Cancer

A unified computational model for revealing and predicting subtle subtypes of cancers

Inferring a protein interaction map of Mycobacterium tuberculosis based on sequences and interologs

Rewiring drug-activated p53-regulatory network from suppressing to promoting tumorigenesis

The coding genome of splenic marginal zone lymphoma: Activation of NOTCH2 and other pathways regulating marginal zone development

Inferring Protein-Protein Interactions Based on Sequences and Interologs in Mycobacterium Tuberculosis

Network screening of Goto-Kakizaki rat liver microarray data during diabetic progression

NOA: a novel Network Ontology Analysis method

A Regularized Optimization Model for Community Identification in Complex Networks

A SVC-based Method to Detect Multi-scalar Noisy Communities in Complex Networks

Multiple Resolution Community Structure Analysis

Sequence-based protein-protein interaction prediction via support vector machine

Uncover the Transient Transcriptional Regulations by a Novel Sliding Window Correlation Strategy

Disease-Aging Network Reveals Significant Roles of Aging Genes in Connecting Genetic Diseases

Modularity optimization in community detection of complex networks

A Constrained Optimization Method for Community Detection

Align Protein Surface Structures to Identify Evolutionally and Structurally Conserved Residues

Analysis of Transcriptome of Rice Anther

Gene Prioritization for Type 2 Diabetes in Tissue-specific Protein Interaction Networks

Recognition of Structure Similarities in Proteins

Remarks on network community properties

GeneCT: a generalizable cancerous status and tissue origin classifier for pan-cancer biopsies

Article

Genetic landscape of ultra-stable chronic lymphocytic leukemia patients

Article

Increased HOXA5 Expression Provides a Selective Advantage for Gain of Whole Chromosome 7 in IDH Wild-type Glioblastoma

Article

Mutational Landscape of Secondary Glioblastoma Guides MET-Targeted Trial in Brain Tumor

Article

Pharmacogenomic landscape of patient-derived tumor cells informs precision oncology therapy

Article

Refined karyotype-based prognostic stratification of chronic lymphocytic leukemia with a low-and very-low-risk genetic profile

Article

An NF-κB Transcription-Factor-Dependent Lineage-Specific Transcriptional Program Promotes Regulatory T Cell Identity and Function

Article

Identification of Potentially Oncogenic Alterations from Tumor-only Samples Reveals Fanconi Anemia Pathway Mutations in Bladder Carcinomas

Article

Repurposing Dasatinib for Ibrutinib-Resistant Diffuse Large B-Cell Lymphoma

Article

RNA Exosome Complex-Mediated Control of Redox Status in Pluripotent Stem Cells

Article

Spatiotemporal Genomic Architecture Informs Precision Oncology in Glioblastoma

Article

Clonal evolution of glioblastoma under therapy

Article

Genetic Landscape and Gene Expression Profile of Chronic Lymphocytic Leukemia Patients with Ultra-Stable Disease

Article

Inter- and intra-patient clonal and subclonal heterogeneity of chronic lymphocytic leukaemia: Evidences from circulating and lymph nodal compartments

Article

Kinase-dead ATM protein is highly oncogenic and can be preferentially targeted by Topo-isomerase I inhibitors

Article

Network Propagation Reveals Novel Features Predicting Drug Response of Cancer Cell Lines

Article

Network stratification analysis for identifying function-specific network layers

Article

Prognostic and therapeutic role of targetable lesions in B-lineage acute lymphoblastic leukemia without recurrent fusion genes

Article

An information theoretic method to identify combinations of genomic alterations that promote glioblastoma

Article

RNA exosome-regulated long non-coding RNA transcription controls super-enhancer activity

Article

Transcriptomics identify CD9 as a marker of murine IL10-competent regulatory B cells

Article

Clinical Impact of Small TP53 Mutated Subclones in Chronic Lymphocytic Leukemia

Article

Noncoding RNA Transcription Targets AID to Divergently Transcribed Loci in B Cells

Article

PU.1 is essential for MLL leukemia partially via crosstalk with the MEIS/HOX pathway

Article

Tumor evolutionary directed graphs and the history of chronic lymphocytic leukemia

Article

复杂疾病的分子网络模型研究

Article

APG: an active protein-gene network model to quantify regulatory signals in complex biological systems

Article

E3-ubiquitin Ligase Nedd4 Determines the Fate of AID-associated RNA Polymerase II in B cells

Article

Genetic Lesions Associated with Chronic Lymphocytic Leukemia Transformation to Richter Syndrome

Article

NOA: A cytoscape plugin for network ontology analysis

Article

Whole-exome Sequencing Reveals Recurrent Somatic Mutation Networks In Cancer

Article

A unified computational model for revealing and predicting subtle subtypes of cancers

Article

Inferring a protein interaction map of Mycobacterium tuberculosis based on sequences and interologs

Article

Rewiring drug-activated p53-regulatory network from suppressing to promoting tumorigenesis

Article

The coding genome of splenic marginal zone lymphoma: Activation of NOTCH2 and other pathways regulating marginal zone development

Article

Inferring Protein-Protein Interactions Based on Sequences and Interologs in Mycobacterium Tuberculosis

Conference paper

Network screening of Goto-Kakizaki rat liver microarray data during diabetic progression

Article

NOA: a novel Network Ontology Analysis method

Article

A Regularized Optimization Model for Community Identification in Complex Networks

Conference paper

A SVC-based Method to Detect Multi-scalar Noisy Communities in Complex Networks

Conference paper

Multiple Resolution Community Structure Analysis

Conference paper

Sequence-based protein-protein interaction prediction via support vector machine

Article

Uncover the Transient Transcriptional Regulations by a Novel Sliding Window Correlation Strategy

Conference paper

Disease-Aging Network Reveals Significant Roles of Aging Genes in Connecting Genetic Diseases

Article

Modularity optimization in community detection of complex networks

Article

A Constrained Optimization Method for Community Detection

Conference paper

Align Protein Surface Structures to Identify Evolutionally and Structurally Conserved Residues

Conference paper

Analysis of Transcriptome of Rice Anther

Conference paper

Gene Prioritization for Type 2 Diabetes in Tissue-specific Protein Interaction Networks

Conference paper

Recognition of Structure Similarities in Proteins

Article

Remarks on network community properties

Article